We administer two magnet high schools: ACT - Arts at the Capitol Theater, a performing arts magnet high school in Willimantic; and QMC - Quinebaug Middle College, located on the Danielson campus of Quinebaug Valley Community College.

EASTCONN also runs LEAP (Learners Empowered to Achieve their Potential), an alternative high school for non-traditional learners, located in Willimantic.

We also administer a number of special education programs, including the EASTCONN Autism Program, located in Columbia; In addition, EASTCONN administers the Regional Transition Services for adult students with developmental disabilities, ages 18-21. EASTCONN also collaborates with Woodstock Academy on a program for high-school-age students with intellectual/developmental disabilities.